Basic Information | |
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Taxon OID | 3300006929 Open in IMG/M |
Scaffold ID | Ga0098036_1018083 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2239 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (10.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | -13.003 | Long. (o) | -80.809 | Alt. (m) | Depth (m) | 90 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000126 | Metagenome / Metatranscriptome | 2021 | Y |
F004165 | Metagenome | 450 | Y |
F091885 | Metagenome | 107 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0098036_10180833 | F004165 | GAG | MKLNKKNKSKVRRQVDLDLGVKPPKTIVFTNKKIYTRKKKHKPNTNENG* |
Ga0098036_10180834 | F000126 | N/A | MRNYKITRNKGEWYNVEVTDSYGNEYQNYFETAHKANEWIYHVWNNEEWFNSANSQELLAKAIQECKEIDKKANIRAIL* |
Ga0098036_10180838 | F091885 | N/A | MNDITGIVVKNILQEKLEKYKMYYNSSYQYKDYDMSDYYKSKVKELKLKINKII* |
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