Scaffold Ga0098036_1000370

Overview

Basic Information

• Taxon OID: 3300006929
• Scaffold ID: Ga0098036_1000370
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20028
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (83.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019554	Metagenome / Metatranscriptome	229	N
F021405	Metagenome	219	N
F094416	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098036_100037016	F094416	N/A	MFEILIALFIILTASLGIVLYKSINRLSFYEDMYGDMYGRFATLGDSIRGVLSREIYSDDPVIRDFINQLQDIEYYLQQLDESYKFNTLGEGVEDES*
Ga0098036_100037017	F019554	AGG	MSLDKLKDISLFEGKSLDEIFNVIFKQSLEEREEAMATFKRFREMVGDSEDLFMSGDKPHPYLDSAHKATENLIKMITASHKLLDLESESKDSVNANDILDLLDKEGIAPKRFMPESDGEKENDQKEDDQSIVEFPQLNKKV*
Ga0098036_10003706	F021405	AGGAG	MIEQVEEIVDVEEDRLKYRVEYIRENLIQLSQKLREQIPQGLTDEDLTKDGTFKNWVVVNSVYDASMKDESDEGFNRMLYYLYDKSKGNIARLVSNYDIDIKFNSAGQLEDIKLIVLEEEGSDE*