Scaffold Ga0098041_1058221

Overview

Basic Information

• Taxon OID: 3300006928
• Scaffold ID: Ga0098041_1058221
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1248
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045797	Metagenome / Metatranscriptome	152	Y
F067212	Metagenome	126	Y
F068236	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098041_10582211	F067212	N/A	MQIHCKVCGKDVTMETEFETRRPYRIINNHKCEVKLARAKAKALESGFIL*
Ga0098041_10582213	F045797	N/A	MRIIRTVKEDSCIWIIEEFAGTTISTKWRPYLVGDLPNRFGCIDDGTDKGGINSWFNYKGYTYVRDERY*
Ga0098041_10582214	F068236	AGGA	MSETRDIKFTHDQVIEVGGEYLKSKETGQWVSENNVENYEVEMLNIQIQQYYEREQDKYY