Scaffold Ga0098041_1033897

Overview

Basic Information

• Taxon OID: 3300006928
• Scaffold ID: Ga0098041_1033897
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1663
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026714	Metagenome	197	N
F043623	Metagenome	156	N
F054920	Metagenome	139	N
F056144	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098041_10338971	F054920	N/A	TCDDDDLDKEYGMYYGNLEFDPLDIMESHSGHTKMFHKENGKWQQL*
Ga0098041_10338972	F043623	N/A	MFKRIKKAEDDPTLEQAQKFVKGWVERLVLSTGTLLVDEEARMKRGIKKNKAASFLANKDGYPEILGPAIFIPHEVKSEWY*
Ga0098041_10338973	F026714	AGGA	MASTYKKLTVYLNEEQEKVLTDFDLKIIDKNDFDLLHYTVGIISKRLAETNHKMITDVDPNTCDPATLQYSSKTIG*
Ga0098041_10338975	F056144	AGAAG	MIKNIYRGYDIVEYDTQWKVELEGKSIVTFDKEEGVSGEASCMCEIDRIYRNDRKEIDANIQRVDAQVKLDNNIKKARNNGS*