Scaffold Ga0098041_1013801

Overview

Basic Information

• Taxon OID: 3300006928
• Scaffold ID: Ga0098041_1013801
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2664
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016474	Metagenome	247	N
F016595	Metagenome	246	Y
F032860	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098041_10138011	F032860	N/A	TLEIVSNNAKKKGHRSGYRCHQLAKELADQFNVFVPTLTSIITNKENKNNPSKISGNFAMSKGEYEIYKAIKSGVRVKVKDIYDFKLTKKSLNTIKQYVFILKKKGFVQSIKVVGKHYKYYKVNELSYTTMDQNLINKLSS*HKKINKIIINHLQEILKVVFLNLNLNSKRIFTNENRNIFN*
Ga0098041_10138012	F016474	AGGA	MKTETYLIKHEYDQDKKEMISKPCKVEMRWKIYDSFACLEIIGFENKAETIKHHLFCHKDQTINILNSLNEQIENVDDLEPCKKDRFFFNESVGVQWGLHGQLDLEDLINEKVGS*
Ga0098041_10138013	F016595	AGG	MGYFFKCNDCNYIEKFNDQFNIPEKALEGKLNDYESVICSGCVTKKTRLKGNYIIIERNK