Scaffold Ga0098041

Basic Information
Taxon OID	3300006928 Open in IMG/M
Scaffold ID	Ga0098041_1004425 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006928 Open in IMG/M

Scaffold ID

Ga0098041_1004425 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4917
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

4917

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.401	Alt. (m)	Depth (m)	75
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-11.499

Long. (^o)

-81.401

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F059123	Metagenome	134	N
F074904	Metagenome / Metatranscriptome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0098041_10044252	F059123	AGGA	MPKSIEQIKKENPYYANVPDLKLADAIYDKYYKDKVSEEDYYLNAFPNLADEIVENQDLISPDDEMFLPEGGRELLNFRPTVGMIAERSGISIDDPATASSRMGGSFGINPEQKALAIKNSLSKLYGQDIDVRIGANTGQLEYYNPKKKQYALVDAPGVEIGDFGDMAGDAMVIIPDLAVTAFTAPFIGTGAIPAGAAAAGIGEYARLKIGQVAYDINKTNPDGSEVTDTQLANEAFKTAGISAAFGYGGLGTAKIIKGVNNIIKGRIQSKDFVDLVNTKTEAEDIAKTINDKLTEGKLNTKLRFKTSQALNDPDLMAAQEVFEKSNRLGYVGDFKRANTNEMNALNDYFTLLRSEFDPKGLYTNQNQYDFGNLVQGVIRKRNEPQIKSLIKQQENTQNLLNQTINELPNGTKVATGVNVRSAIEDTRKIFKKNSDAALRKLNEASGGVQIQTDIIGNALKTLQKQGKDNIFNSAESSLVKNVKNKNILEGKVNAPVTTLRNAMSYLNRQIRKGEKGLTTEDIDVGALKFMVGEINKQVRRDAPDSFVNAFDIFNDVYAKGKSKLDDTIIADVMKIRNKQLVYGDEAVFDLTFKKGLNSKKVADDLYDVIKDYPDAMLAYKSSINDFYKKEVIDNGKVNVNKHKTFLKNFEDKLKVFFNPKEYERIKKIGGLQETINNIEKNRDTLIKNLSRSFEGKLESSTPGELVNKIYRPNNIGEIRQLKKILEKDPEIFEAFKTNVMKDLNERVTVKSGSLGMDVISPERFKQYVYGSGGEKGYQFAMREIFGNKFMSDIKTLNDALQITSRTAPASLQREGVYGNFFTDIIRARVGQFTPTGRLLTAGKRIYTRSSNAILKNAILNPESLKDLVKLKTLKKSSAEAAYILGKLNGMIFLDPTQG*
Ga0098041_10044255	F074904	N/A	DRIKKFYFDLEQKVRAKPTKHIIALYILFIISIIL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098041_1004425

Overview

Ecosystem & Geography

Associated Families

Sequences