Scaffold Ga0098041_1002504

Overview

Basic Information

• Taxon OID: 3300006928
• Scaffold ID: Ga0098041_1002504
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6645
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -11.499
  • Long. (^o): -81.401
  • Depth (m): 75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031465	Metagenome	182	Y
F054002	Metagenome	140	Y
F097234	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098041_100250414	F097234	GGAG	MTDMFLGFAALIFIEQNKEFIHQARENKKEGYVWELDPGFVNKDALAIAFEGNGKRTVIWRQKKVVEVRLPLPKPKEMK*
Ga0098041_10025042	F031465	AGGAG	MLLNRTHVKNLRKVLENKLRGSMDNFIVEVGSANFNDTEVTFKINLRMKGAKSQSEKDLEDFASIDSLDLNKVATLDGKQFKLSGFRRKARTKPYLIQDQRGGGEYIITTDTAKRYFAKEVA*
Ga0098041_10025045	F054002	AGGA	MKTIKIEPKDRIELLKYVNVLREFNCNTSEKIPIHYEHICEIETLMYRLANLLEFEQQHRGGWYCDYQLKEDLPKEKNDGDK*