Scaffold Ga0098041_1000821

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098041_1000821

Scaffold Ga0098041_1000821

Overview

Basic Information
Taxon OID	3300006928 Open in IMG/M
Scaffold ID	Ga0098041_1000821 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12240
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (83.87%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-11.499	Long. (^o)	-81.401	Alt. (m)		Depth (m)	75
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099841	Metagenome / Metatranscriptome	103	Y
F100956	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098041_100082113	F099841	AGGA	VSQIHGYLNSVPEDFGHRWSNNSDHTRVECQYCGDSYGSRRWCDNRLVVSEQDRDMDEAMSQYYSQEAE*
Ga0098041_100082123	F100956	GAGG	MGKVDYEDETTFGERPPLVYDGAFSSEEYDVFSDDEELICGLENPETCESCE*

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