Scaffold Ga0098034_1020020

Overview

Basic Information

• Taxon OID: 3300006927
• Scaffold ID: Ga0098034_1020020
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2060
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026289	Metagenome	198	Y
F041246	Metagenome	160	Y
F062829	Metagenome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098034_10200201	F026289	GGTGG	MSLTEEKKPKAKNQDESFIDTLIEMLAEPHHDLAWNEKFKAVVRKHFDI*
Ga0098034_10200205	F041246	GAG	MKYVIGITKRFSYTKSENHTKKGRKHFFCYELDVESGKFRRIRISTIKAIYYKITFIFGLKAKKVTNVYCKDCKKHYDCIVNFWDKDLDCPNC*
Ga0098034_10200206	F062829	N/A	MRCLSHFFVFKTEKCMKVSYKFMKKTRICYFCARKLKQLYGITETDLLENNFYKKFLKSGSLSPKYLPLSMGIS