Scaffold Ga0098034_1004421

Overview

Basic Information

• Taxon OID: 3300006927
• Scaffold ID: Ga0098034_1004421
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4746
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -13.003
  • Long. (^o): -80.809
  • Depth (m): 160

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016597	Metagenome / Metatranscriptome	246	N
F029557	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098034_10044211	F029557	GGAG	MATPSNKHQKSIEFDEVSLFSIDRAVYDWFNTKHATNIQGRKAPVTFGSWERFAQMQDNKYDDNLNRMRDPSGMLILPMISIRRGDVTYNTDRFVFQQATGAPRIEISRRVAMSNFD
Ga0098034_10044212	F016597	GGA	MPLDRDTVPHTWEGTGNHGTYPFASSTGDSSYGLFFSPREMELFNDYNTELLGIIAQTGVNYYRIEPDSSDPNSIYGESEIKVTRDPVQVMCWVMLDEPETETNSFTVDVRRRIELYMHKDRITELDLVPRMGDFVGYDNQYFEIQRCGVPNFVFSYPQTKLGVIARCMSVREGVFDPNRDFVNKEYVGDSENPY*