Scaffold Ga0098057_1128445

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098057_1128445

Scaffold Ga0098057_1128445

Overview

Basic Information
Taxon OID	3300006926 Open in IMG/M
Scaffold ID	Ga0098057_1128445 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	618
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.61	Alt. (m)		Depth (m)	250
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008691	Metagenome / Metatranscriptome	329	Y
F093971	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098057_11284451	F008691	GAG	MPLGYDVKEEATEVKKNLFENRDSFVMLVVAGVVGGIVTRLFVPKSITEGSVFNRFKSWFGYDEEEEE*
Ga0098057_11284452	F093971	GGTGG	LSENKKTKKDESENFIDTLKDLLAEPHQDDVWNEKFKATVRKYFEI*

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