Scaffold Ga0098057_1027955

Overview

Basic Information

• Taxon OID: 3300006926
• Scaffold ID: Ga0098057_1027955
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1405
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098057_10279553	F005148	GGAG	MKQKKYEEFLKRTLPESEEVECKKCEQKFYDEWNLLSLASLQMCMLCANRNLDKETIERKYHNVK*
Ga0098057_10279554	F009404	GAGG	MSSDEPEHIQPKGESLVKHCPICGVEFDEIVLTNRWLKCDSCETIFQVKVKTGE*
Ga0098057_10279555	F008755	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVRDFLNDPVNKKSGWKSKDARFFRLGFQKVAKENNFNVMNIGVTPTPSRSKTQKGSMSINVKTKQKNPPPMGESIKPPTEQEKKFGALPQTPQLESQQAQATYYSAQSVGQIFETIV