Scaffold Ga0098057_1015434

Overview

Basic Information

• Taxon OID: 3300006926
• Scaffold ID: Ga0098057_1015434
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1942
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.61
  • Depth (m): 250

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F010690	Metagenome / Metatranscriptome	300	Y
F057437	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098057_10154341	F057437	AGG	MVSVAVPAYATKKAKDVSGEFLKEKMGYDFVNLVTKLAIFYVISFLISKYMEAVIYFQGGLSTVAGFFGIKMAQADQLPRQWVELFIDVNQKTVTSTPTAPGQFNPEGWDKPYDYGSLEHQEKEPYLFPEKEVKYKFWDL
Ga0098057_10154343	F002100	AGCAG	MPHLEERPALIKPVYDVSNYGEDSVLPLNCLSGSTVTLTPSTATFVQVEEDSKIPIDEVNMFIMDSDKMAGISAGDDSDYDETFQWEPDMSAQAYQITLNFASFMKVSAYTSGNFAISSVQIICKQIGGGEGDVTYFNKTINPGMANMTGTAEQVAIINFSTNVSAKVFDKPLTFQIKVNTSSGVGTYQCGLVPLFCYLGPAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNMIDTGIGI*
Ga0098057_10154344	F010690	N/A	RPEHFYHKADNESSFTTATTTSGNSFTINDGMWCEDLYVSAFTAVYTVSQSLSGYGEFSSNDFGNSLPLKVPLQPGGAGLGSVGTQGTLQLASYHNTHMPMKTSCKINTAFTNDVTQTGTTSFVMGVGYTKQ*