Scaffold Ga0098050_1069052

Overview

Basic Information

• Taxon OID: 3300006925
• Scaffold ID: Ga0098050_1069052
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 916
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F029432	Metagenome	188	Y
F056061	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10690521	F000126	N/A	MRDYSITRKKGEWYDARVIDSYGNKYQNYFEHAHEANDWIYYIWEKEEWFNSVNSQELLYNAIENCKR
Ga0098050_10690522	F029432	GAG	MSGKGQLVGWVVVLGMWTSCGIGLNCLKTQEQGNNEVVNTAEDMIEWIGHDLESGKVDSTIADTYITNLEGIITDSRK*
Ga0098050_10690523	F056061	N/A	MYETLEHWKVYKQEKELQKKISKEFGLDELTTKENVVKEFDQWIDKLITKNGVTKI*