Scaffold Ga0098050_1013437

Overview

Basic Information

• Taxon OID: 3300006925
• Scaffold ID: Ga0098050_1013437
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2352
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F056531	Metagenome	137	Y
F074038	Metagenome	120	Y
F081771	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10134371	F056531	N/A	KMSNKNISRFTENYLRNTKVRKGDFDWDLYNMKEELTDEQEALRQLNGLIETIATGNTSYTLECFKTDVEEAISLTVKENENE*
Ga0098050_10134372	F081771	AGGAG	MSNFNMMGAVGYRISHTDESQDYPIATIKIAFKMPEGENGRIEMFHVHEALRRMIDKKQISFDLTLPPRPQPELWDLSDESN*
Ga0098050_10134374	F074038	AGGAG	MDVERIQKQVADLKTNVSLLEHATVSEFNSDLLTSLHRITDVLDDLQPRVIDPADLSKEAEQKVLNTLSELTARIDAVEGSMWTEDGIEDIAKTAIQNMDFSAELDDGSLSVWAR*