Scaffold Ga0098050_1006055

Overview

Basic Information

• Taxon OID: 3300006925
• Scaffold ID: Ga0098050_1006055
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3721
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F007417	Metagenome	351	Y
F058166	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098050_10060551	F001942	N/A	VPRKTSDQHQANSRLGALGESLVQTFLLEYADFCYPTQEKHPADLLTEFGRSKYTVQVKSRRATKEKKFVFAAENSRSQSETYRNYHCDILAFVFFDGEEKRIMFKANTSSQNYFTFDKKVITESMELDSLKETLDNLSSVPVLNPLI*
Ga0098050_100605511	F058166	AGGAG	MDILGGMSNPNSESQQVYLAFKTAQQKFFVNGETEIEFKYLQFDPATFKSGWGRYAGEYQYQWDAKFGVAEPKPADDWKRAFSCCVMPHGHDHALIWSRFTFAESSAFNKILSGFWNQMDANSDSLPVVEYKGSKEIQVGMGRSSELSFEFTKFAPRFDNFVIPPFYDND
Ga0098050_10060553	F007417	GAG	MTRYTLQVQLPSLGWVVAIKTSDLFYMAKKRARLIAQGHKVKLTKEKK*