Scaffold Ga0098051_1108090

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0098051_1108090

Scaffold Ga0098051_1108090

Overview

Basic Information
Taxon OID	3300006924 Open in IMG/M
Scaffold ID	Ga0098051_1108090 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	744
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004179	Metagenome	449	Y
F080235	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_11080902	F080235	N/A	MESESNMKTEMIDGMIIEKNKYGAYVISDIVKGYWVHQQYYFYTKKDAIKLFRKFRKEKKNETIS*
Ga0098051_11080903	F004179	GGAG	MKTKEIILELKNVYGKDLIYPSCHIANAMIKLKNAKTFTKNDLNVFKALGLIIKWKASQI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.