Scaffold Ga0098051_1055111

Overview

Basic Information

• Taxon OID: 3300006924
• Scaffold ID: Ga0098051_1055111
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1095
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032856	Metagenome / Metatranscriptome	179	N
F034391	Metagenome / Metatranscriptome	175	N
F070144	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10551112	F034391	N/A	MTNYSKQYDNKLLEGILDHMANELKGEFGFETLDAEDKLDVIALFVDNPTSYETPYLHSIETTDTEVVSSRKKSNVEILQDLSNYTRYDG*
Ga0098051_10551113	F032856	N/A	MMDEAKYRYWSTVYTDYLIEDVSDELVNEYETDNPTNEANANDEFVVEEDYVMQLVEYWIDNYTMGNPKCKEIIDNLSYDIFEDDDEFGVRPDSWKQAGVWALDHAIHNNDNIQAIYKLTNEKLQKLWKK*
Ga0098051_10551114	F070144	N/A	MEKVNPEMEGENWSVKKHTVHKDKYVARHINIWGSEAHTVDSLIEAMDIIDKFKNQEDWILQKREEFGDYMWNNDDFRKD