Scaffold Ga0098051_1032452

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0098051_1032452

Scaffold Ga0098051_1032452

Overview

Basic Information
Taxon OID	3300006924 Open in IMG/M
Scaffold ID	Ga0098051_1032452 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1476
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)		Depth (m)	9
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F063163	Metagenome	130	Y
F063608	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10324523	F063608	GAGG	MGRKTPLKQRLLREYVKVSKNAVREPRNWREIATRVRWERLRKILWRRYDYMQSL*
Ga0098051_10324526	F063163	N/A	KLARNAGRKFTPSAAHEPEQPAFDFGDIEMQEHLSKLPHKLKETG*

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