Scaffold Ga0098051_1018452

Overview

Basic Information

• Taxon OID: 3300006924
• Scaffold ID: Ga0098051_1018452
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2035
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002542	Metagenome / Metatranscriptome	550	Y
F008719	Metagenome / Metatranscriptome	329	Y
F056526	Metagenome / Metatranscriptome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10184521	F056526	AGGA	VASIYNDIRAALESHLSNVSGIPSVAYENVTFEPTTGTSFLQV
Ga0098051_10184525	F002542	GGAG	MHPTYLGWQVDWPVFIKIPVSSAGKNWKRGEHFNWLEQSIDPDKVASLYTSGYLYHNKELEVQNKVGDRLSEFSSKQLDTLVSLLNVIVKDRTSSTSEYNTKKCRKSKIDDKQRGLIRRFLNNSAWISEDFYRIRDEVLG*
Ga0098051_10184526	F008719	N/A	LKRQQVAEHIQVKMSYDMKVVGADLGYFFNAIVQ*