Scaffold Ga0098051_1010686

Overview

Basic Information

• Taxon OID: 3300006924
• Scaffold ID: Ga0098051_1010686
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2793
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002495	Metagenome / Metatranscriptome	554	Y
F068127	Metagenome / Metatranscriptome	125	Y
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10106867	F071633	N/A	VKVVFLILVIYSGDGGLKYEKIPFAYSLLPITCDEMFEKNVKYVENQNYKEGNGEVWVLTKYKNQNVVAHYCKDSEGNYVR*
Ga0098051_10106868	F002495	GGAGG	MSENNGNAKQKDWVLFPYDANNEKAIRIDFSGNVNLDNGNKGTILGVKGASRDGNTKFVKVFAQVGVLFKGDDKFTGEMNYSEAGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKEIPF*
Ga0098051_10106869	F068127	N/A	NALINQKDTIKDKIKMQTTETKLTKLYSDWKKNNDSEEIEKLFEKQQETIKTNGGTNVRKQW*