Scaffold Ga0098051

Basic Information
Taxon OID	3300006924 Open in IMG/M
Scaffold ID	Ga0098051_1010024 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006924 Open in IMG/M

Scaffold ID

Ga0098051_1010024 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2901
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2901

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-14.51	Long. (^o)	-76.2	Alt. (m)	Depth (m)	9
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-14.51

Long. (^o)

-76.2

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F015659	Metagenome	253	Y
F020445	Metagenome / Metatranscriptome	224	N
F026438	Metagenome	198	N
F046315	Metagenome	151	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10100242	F020445	AGGA	MSDYDNSAALWKRTPRDTDVAGKKYPAYNGNITVGGKKMNLAAWLNTEKSKEGQPDISLKISEIVAKEDVSF*
Ga0098051_10100243	F015659	AGGAG	MKNGLAEAIKKFRDSIDDKDYANLGAKGKYLTVPYRIKFVRDFFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNADKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKELPKPKTNGKTKTPKILADEWIEVLKKTATHSVSVGKFEQNLNPLRQEYLSDLKQINSDLIQQQRIDQEYISLQKQITNRKK*
Ga0098051_10100245	F026438	AGG	MICLYMANHINVIGESYKKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFSGGTLIHLIVQDSLTKGMKIAEVIKSEKIQNKINEYEPLDEKDKKKFEFIVKSAQETALNHLNNIAELGGQEWKDEIEQVLWTPPVKTYWLMYIDLVSKDLLGDLKNKFGNATLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQENCEDLSQENLDKALKELMIYEIAWEKKLELADGDLDTLAWLCCPDFSDIKKKSFWWTGVAKEQIDRLLKHYE*
Ga0098051_10100246	F046315	N/A	MNNTLNKKLLEYSLKSGYNDEFIKGYMKRNNLLPKEFTFRKESLDLILKRYNKKIIDFVRDTYLPKEQKNKLAQISKILNPKKNAPHYYTINDLAYDLSTWINNFNTSNVSITPQFFMGENVQIECIGELFGNGQIGLHKIKDRHKINIHPKYTSFQAIECQTEHKRGLMMLFQPTKNIDRNVNNRSAICQDKKTKVIWFGFLEPQSNGKFNILDKSQSTGKTIGKLAENIQLSWCAEVKAAYYPNIYNI*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098051_1010024

Overview

Ecosystem & Geography

Associated Families

Sequences