Scaffold Ga0098051_1008564

Overview

Basic Information

• Taxon OID: 3300006924
• Scaffold ID: Ga0098051_1008564
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3171
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029593	Metagenome	188	N
F076603	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_10085641	F076603	AGGAG	MIQELNQQLKSMYLEPRSKLRVDVDYVVGRLETIVDIATQHKIDADSVVDGFDYLNKDIEDFLN
Ga0098051_10085649	F029593	GAGG	MGQTFFYDWTSKGRKAWELAMVKVSRIDNRLARVADFGNSQSWAMDRATMPPSNKNRSEVKGSCSKKKEMPLQALYRKCQAIWDFSHFILFPFIGDFSSIKSGIPFNRMNKSGKPLEALFSIFWKKEFLGSAFFISFASVFSVDI*