Scaffold Ga0098051_1006225

Overview

Basic Information

• Taxon OID: 3300006924
• Scaffold ID: Ga0098051_1006225
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3822
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025996	Metagenome	199	Y
F033762	Metagenome / Metatranscriptome	176	Y
F082531	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098051_100622512	F033762	GAG	MYDDYDLDYTYAPAYEYDLDETYEMCVQSYAHTHLDEDLDEEYTRDTQDYDALAYKHYA*
Ga0098051_10062253	F025996	AGGAG	MKLSFQREMHIGELDKSIIALSKRKLKLLQEVENINQTISFLRQQQEDLYDV*
Ga0098051_10062256	F082531	GGAG	MTQSVNPHSEMNTDDIEMFIKAFDDFMQHAETEIDSYQKWKEAEEYTNKFFERKAAELEVTVDYYMQEFL*