NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098053_1084093

Scaffold Ga0098053_1084093


Overview

Basic Information
Taxon OID3300006923 Open in IMG/M
Scaffold IDGa0098053_1084093 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis japonica group → Amycolatopsis japonica(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F084704Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0098053_10840931F084704AGGAGMFDLKDVHIILVGCQRAEDYRHNLEIIRYNYPDIGTKLWITTVFNGDQNECPSGIGENTFIYLPENRGYGYGALDAFNEGLDYARCGYRPYVAIFNFDVWFLTQNGFRTAMDEFIESGKQFAAGYHQSHHWAMTDCMFFRKEFLEKLLPIQDRVLNSRKENGWLKKQMDGTQLGFENMEEWMLYS

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