Scaffold Ga0098053_1007630

Overview

Basic Information

• Taxon OID: 3300006923
• Scaffold ID: Ga0098053_1007630
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2561
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008105	Metagenome / Metatranscriptome	339	Y
F014794	Metagenome / Metatranscriptome	260	Y
F018622	Metagenome	234	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098053_10076302	F018622	GGA	MLIQKAALDSTLLNNVCEIRFARRIIKPGQAATRRMLCTKSLSLLNSVNGRISLNYFPPKGPPKAYLGPDHLAVAWDIIMQDYRNINMNQCDLIQEIPADDDFWVYFNENIYPMSAEQKVNFMNS*
Ga0098053_10076303	F014794	N/A	MAMASIDNLAPTRSLIDLSNPDKGDFGIDDFELSFVFDDILLIEYIDETAEGEVERNGILVPTNALTKAWRKGKVILAGPDAKYAKEGDIVIFPNNMGVTISGVDVTNRGKVTKGIFLNEERMFGICKQKNVNTKSSS*
Ga0098053_10076304	F008105	N/A	MNFFQLQNKLFYSKKDNADVLDTEGEQNFVPFMFNRWLSFYNNDMCVFTNETLNKFSTIFDDKQQSYRLYYYLIPRLKWKKISYIKKKKKEESEEENITIIAKNQNISKRELLQYVELSTDLAK*