NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098053_1002224

Scaffold Ga0098053_1002224


Overview

Basic Information
Taxon OID3300006923 Open in IMG/M
Scaffold IDGa0098053_1002224 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5424
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-14.51Long. (o)-76.2Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030888Metagenome184Y
F049945Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0098053_10022241F030888N/AMNIFQFTDDLDYDKEYKYNILVYPNITFMRDLEKDSYVVVLRNVIKELNKTSWGKYI
Ga0098053_10022247F049945N/ASGYSGLILKGDDWELSTNLSDGNLNVEEAKYNWAVTEAITLTFGSQAEPYGLAWGLHRPSNNQFVSIPREHSISEGVGISSVPFGVGISAFYGNDSYWASRVSYNVSLFGINSEVGLSVNSNDAQLIDVSKNGSILGIPFETSLEIDLANENAYWLRGVFTPEFAKGASILAGYNSDDEVLYGVGYKCSDKCFISTELSVEGDTSFRISYSF*

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