Scaffold Ga0098053_1001366

Overview

Basic Information

• Taxon OID: 3300006923
• Scaffold ID: Ga0098053_1001366
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7359
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.51
  • Long. (^o): -76.2
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052942	Metagenome	142	Y
F067640	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098053_100136623	F067640	AGGAG	MIEAGSLLRMWGNHSTWLALDEVADTVLVVSQKTNHKMWANKASFEVIG*
Ga0098053_100136624	F052942	GAGG	MKVWVMQGSYEGELFSSVHLTQKGCALACISDLMEF