Scaffold Ga0098045_1111632

Overview

Basic Information

• Taxon OID: 3300006922
• Scaffold ID: Ga0098045_1111632
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 641
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098045_11116321	F048575	N/A	TLQNSLILDEEYEYEVSVLDLWKTSGEDDPYSAIYLAMNTLRYPNPNVPDEEIEEHLSELWDERWHEYYV*
Ga0098045_11116322	F019393	N/A	MKDGMSIMYSEIKTYTSMSGFIQAHEGLWHMLGSKYKKLDKETVLIDNTKWKLIKGNMTCLKK*
Ga0098045_11116323	F083382	GGA	MPEKIKDRDTLVSVDDAGDVAKKEYESYIKRQQKEVVDDLDNQYYSEGEQYD*