Scaffold Ga0098045_1108686

Overview

Basic Information

• Taxon OID: 3300006922
• Scaffold ID: Ga0098045_1108686
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 651
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006918	Metagenome	362	Y
F027811	Metagenome	193	Y
F091885	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098045_11086861	F006918	N/A	MRDYSITRRKGEWYDTRVTDSYGNNYDNYFEFAHEANDWIYYIWENEKPPLTEKEEMDLLANAIWGC
Ga0098045_11086862	F027811	N/A	MIIYSEKELREMISNLRLVKEMSNKFGLQDKSEIELTKYELLLENHTNNKYKEIDEWLNKLINKNGTKEI*
Ga0098045_11086863	F091885	N/A	MNDITGIVVKNILQEKLKKYQIYYNTSYQYKDYDMSDYYKSRIEELKLKIDKVI*