Scaffold Ga0098045_1003264

Overview

Basic Information

• Taxon OID: 3300006922
• Scaffold ID: Ga0098045_1003264
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5240
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -14.205
  • Long. (^o): -77.515
  • Depth (m): 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001839	Metagenome	628	Y
F008915	Metagenome / Metatranscriptome	326	Y
F011253	Metagenome	293	Y
F058519	Metagenome	135	N
F092873	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098045_10032641	F058519	N/A	MANHLKIIGEAYQKFNDTNTSVSANKEPHSLRAFKRYKLNSEQRNKCTNASLTLGTLGHDISEKAIVKNLSVEECIADKEIQEKIKSYVTVDMKDQMKFEFGIKFLKDICQNHIENIKELPKQKWQTEIEHIKWIDPINVPFRMFIDLTGDTHINDLKNKFPTVKYAPLKTKQTKENPNRIGDWTCSHPKIDQRAYTGDLMQIALYSHTTGLKPSLSYASATDRILFTEKNCEELQPENLKRN
Ga0098045_10032642	F092873	N/A	MNNSLNKKLIEISIKSGYKTEVVESYMARNNLLPKDFKFRRSALDLLLKDCNKKISDFVKDTYQDKEHKNKLAQISKILNPKPNAPKYFTENDLANDLAHWFNSFCNTSELIAPNFFVGETIQISVIGSLYGNGQIGLNKGKDLYKINIHPKYGNCQAIESKIGSTRGLMRLFIPKKTIERNADNRFSIAQDKKSKIIWFGYLEPQSNGRYNILDKSYSTGKTIGTLVENIHLSWSAEIKAAYYPTIYNS*
Ga0098045_10032644	F008915	AGGGGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLNIKFEYHCNVGGVPDLIFKDLKLQVRTQIPKNNNSLIIRPKAKPGELYILIIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN*
Ga0098045_10032647	F001839	GAG	MKYFEKVDKDLINNRALNSHEKLIYIICKSFKNAPRGCRISHKYLMIRTGIKTKAKLISHLDRLSLFGLLARKQIDNGTCHYVFDKPTMQEYIQHNLNKRRKISLSKNRHKRNLDRALSYPNIINIPKVIK*
Ga0098045_10032648	F011253	AGG	MKDRKLEINNIIKNFAKNKSLPYSTSLTKIKKDRKGYFQAKDIKQKQKSLSTDRFQQYLKDIAENDTD*