NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0098060_1189944

Scaffold Ga0098060_1189944


Overview

Basic Information
Taxon OID3300006921 Open in IMG/M
Scaffold IDGa0098060_1189944 Open in IMG/M
Source Dataset NameMarine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)563
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)-16.21Long. (o)-76.63Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037414Metagenome / Metatranscriptome168Y
F068124Metagenome125N

Sequences

Protein IDFamilyRBSSequence
Ga0098060_11899441F037414GGAMTNKVVIRDKEGKEIRIGSIVKMTGQDCEDGVVCGFDGDRVDVIELGDGFTIDTDDIEV
Ga0098060_11899442F068124N/AIKEDKFGGEIKDIVDDVFGEYVVEKMRKDEWEGFSDDGEEMYEVLGIIEGVGFISYGEEDLLLVIEEGNKWYSKVDELNLDSIAKEVDFSNGKYDGSLWEEWVELIEESFEKLVD*

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