Scaffold Ga0098060_1038124

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1038124
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1447
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024137	Metagenome / Metatranscriptome	207	Y
F061906	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10381243	F061906	AGGA	MQILVLDTFDNWGHMVSKVDKGVLAKALDDAKDNLTPEQPAEVIVYQTPEDDLE*
Ga0098060_10381245	F024137	AGGA	MLKKKTKLTTKLSTKVIMIVAEAVCKVWKYSRTKYNGVSDFDYHITDLRRQYPNQLVYKHAIGVLPFTCKTNEVDDEYERTSSIKLGDCNIRYTFDKLVKAVDAKQQNVEHLFGDPRVPMITDLITQTKVRHNQPKSLRVLNFERKETNVVKLHNK*