Scaffold Ga0098060_1034013

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1034013
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1542
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F027481	Metagenome / Metatranscriptome	194	Y
F075434	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10340132	F000993	N/A	MTKLHHTAYKKNYKKYILDCVQLDCEEKELKTDQEKINYIFDRFNSEYGWKVERVGKFKAMSDWLSGLALPIDYYYDDIVELAVKMGSIDENPNYKIRSKVEQGYFDFMANIILGFEPKQNQ*
Ga0098060_10340134	F075434	AGGA	MIKYIATIKEWRDRVYGNTYFSAQIHDIEKEGKHYIQFQYGYGSHAEHTCKEFIGLKGFNSELPIKFITIPNCKQKDVKEWGIRK*
Ga0098060_10340136	F027481	N/A	MAKKYLVKFNCIVGEYEHLETYIFDKQMTEYQYCKKFWGLEKKHELKTNVFWDNFMENAIEVYSETEITNNEANKLKQLGVA*