Scaffold Ga0098060_1018064

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1018064
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2216
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F013536	Metagenome / Metatranscriptome	270	Y
F089528	Metagenome	109	Y
F094392	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10180645	F089528	N/A	MYEALEHWNEYQKKKRAQQEMDKFINKLVKKNGTTKY*
Ga0098060_10180646	F000126	N/A	MVQRNINMRDFNITRKKGEWYNTKVTDSYGNKYQSYFENAHECSEWIYYIWEKEDWFNSVDSQELLGKAIQQCKEMDSKNPNLRDIL*
Ga0098060_10180647	F094392	GAG	MKEIDQMLEQWVRNTIIREKFRKIIVKEINKYKTNTNKDG*
Ga0098060_10180648	F013536	N/A	MNKIKHLKNNYIQLNQTIYKPYTICQLAGTRFGEVDEEGFSYITDWFNYKGFTYVAV*