Scaffold Ga0098060_1015384

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1015384
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2435
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007344	Metagenome	353	Y
F009034	Metagenome	324	Y
F045087	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10153841	F009034	N/A	DNRIQIGKRVFRPYCISDLPNHFGCIGFERDNDGDITRYGVSEWFGYQGFTYIPEN*
Ga0098060_10153845	F007344	N/A	MTSYEQRAYDALAMKLTEAGYSYENTSWANDATASISITCTRLIDEEVQVFEFQIYIPNCDYFDPDNEFFNTYTCAEEGLNTIHNFYRPEDLVEHIQNCTRDVIFTN*
Ga0098060_10153847	F045087	AGGA	MDKEQLKTKVDALQANLDVRKSELTTAQVELNVALNELADAGKPVISCDLVGDLMDQIEEMFQETLINVCPEDLSPEFGLNYNEICLEQIDTSNIGFCRHDLEAVFEEFFAIKDDEESDNS*