Scaffold Ga0098060_1014839

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1014839
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2488
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022908	Metagenome / Metatranscriptome	212	Y
F024812	Metagenome / Metatranscriptome	204	Y
F064884	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10148393	F022908	GAG	MPTHLDEAIKVILGPDSKLRDKTPRIYAMPKQEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYNPEIILQQPPFDKHEDQSEIFTLIRKPDERWWSGIKDMFYFMPWYTWWTNEKIMAQWPHFTRSTLRLHDVMEEVKPQHLIKCDDGLNDRVIKFAKEHGLLCYGNIPHEKALRHTKPDIKKLEDTGVRELKAWLRKNPDRQKQLDEYLEPDWQYWEQVEYQD*
Ga0098060_10148394	F024812	AGGAGG	MPITKNNFTHVTNTELEGVETSTFIVDFVNAMNAETGDLSSGSATAGLEATRAVISQFINILAEGPLHESNKQKTYVVRTDSLGTLISAGTLQTAIRALNGAGNVTATISSATVTATDLAIDTANAV*
Ga0098060_10148396	F064884	N/A	DMFVGGPASAGGAFTFTESGADGSSVGTLTAALKALGTVDGINLNDSGTTAKIENLEI*