Scaffold Ga0098060_1010668

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1010668
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2999
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042576	Metagenome	158	N
F077237	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10106687	F042576	AGGAG	MANKTATKKSMLSSAKTQTETAKTEPKVKFGKYSPDAKLKATGKRVTAEHNNERVKAVSGKTVKEAIATGLYTMSGIRYDIEKVKTLEIA*
Ga0098060_10106688	F077237	GGAGG	MKENSSGLRVILIDPFKEKVRVGYPVTDDYMTELKKWMEVSCIDIVTLDKKNMLVVDDDGLLRNPNRYFHWAPTNYNFAGKAAILGYEEDLTVDCQLPISLVEDRLVKWI