Scaffold Ga0098060_1010345

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1010345
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3051
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004163	Metagenome	450	Y
F010947	Metagenome	297	Y
F012625	Metagenome	279	Y
F022314	Metagenome	215	Y
F040339	Metagenome	162	Y
F054357	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10103451	F054357	N/A	KMANVAYRRGDIIMHPMSGKAWLHIAEVKFSGHRGYVYECINQKTGKKVTLSAENESIKLVSKTRKR*
Ga0098060_10103452	F010947	GAGG	MRKDIKKMINPALVEKWNKNKNGSLNGIVFNKGDLVSYTACEGESLGIVLAQHGIMASVQWTKQPEDFNLQGRIFVSSLKLISGVDK*
Ga0098060_10103453	F040339	AGGAG	MSIRDNLDRETYGDLMYRLGQMDAILQDLKGTISRFHEESRRIREAQPPEIVMALDEVLGRIPAAQEIEE*
Ga0098060_10103454	F012625	AGGAG	MDPLHNKTINVGDLVKEHTKRSKGRVGLVHEVISNYYLVVKWLDGSVDKRHRNKYEVTKIIDGEAYPNYLQDYIQGKRW*
Ga0098060_10103455	F022314	AGG	MVKTRDILKLGDMVRLVRHEPPEDPFHTFPTEEIDKMGVGLVVSIEELNSYIDVPEKKWVEYTILWSGRGEQLKHLGFDLIKITGEEI*
Ga0098060_10103456	F004163	AGGAG	MKQTIEQLKRIVLDLKHYFEKSLPLILIGVALGYAFANHLETQRAEPVEIGFATVEDMSFLVQELKECKDNSGLLDGSY*