Scaffold Ga0098060_1007934

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1007934
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3548
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012123	Metagenome	283	Y
F016409	Metagenome	247	Y
F027561	Metagenome	194	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10079344	F012123	GGA	MNKRNPCRVKKVEYTQNGVTEVERRGYAQERKTIDGVEMTFVMEGGDSGIGLWYPTSEVHMTKGKWTNNTKVVVSKKSFWRRSK*
Ga0098060_10079345	F016409	GGAG	MLSANKLGYYLWKRINQDQEGYRKTRPANIRGLYFNRSDLNEYVRDYFHYGVDWDETSKEELQEQRYWDEKDIDV*
Ga0098060_10079347	F027561	GAGG	MEKKIEKEYYESLINDYIDGKARIKGDHPDDVHKAIDSFFHAGKMLVDHPEIGSIPSEYVEKLISTLAQHPEYHPLVVDLIGIINDGKGE*