Scaffold Ga0098060_1005508

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1005508
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4398
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003976	Metagenome / Metatranscriptome	459	Y
F020816	Metagenome / Metatranscriptome	222	N
F046985	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100550810	F003976	AGGAGG	MSKLYREYEYEKECVLHTLDKLDMSVRLLNVWVNEPMGLENAKYVLEKNSNRKYDLLDINMVKELVEEEVR*QLKNY*
Ga0098060_100550813	F020816	AGGAGG	MMKVYEITVSTTIQIDSVDDYAESKEHAIDIMWDRWGVYKDTLEITKVKTWEEDDE*FNRTL*
Ga0098060_100550814	F046985	GGAGG	MSDLIELYNESWSEKFDVDVDASKSIKVHVAPKTYAMLVQIGVFNIHSKGIVDWVSKVDVEAIYMNLDFSVDMLLQNYQAIKMAVMLKEYPFRTGYQQQADKIWNNILQHLSEFNPEDAEELRNKLFKRRVA*IELYTKN*