Scaffold Ga0098060_1005140

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1005140
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4567
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (47.06%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037683	Metagenome	167	Y
F038711	Metagenome	165	N
F101312	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100514011	F037683	GGAGG	MEHNHAQDQHDRVMINRIKIDVAEWMTTHGQIQMGEESVSDVLKVIDESVERTHRIREDWMKPDRS*
Ga0098060_10051404	F101312	GGAG	MKDLIKELSTESNAKLEAAISAGATHARFTYADGSFHAYPIEEINRGLNAHRRSRLGLVLVKVTPDTKLESLPFWNSFVDDREINPN*
Ga0098060_10051405	F038711	AGGA	MSNPLCYTNHMMKMKNEEMELVNNNGTWTIKWNDGFKREFDSFFKAKLHFVALVNQQIAMER*