Scaffold Ga0098060_1003199

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1003199
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6069
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (56.25%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002249	Metagenome	578	Y
F015796	Metagenome / Metatranscriptome	252	N
F040345	Metagenome	162	Y
F080623	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100319911	F080623	AGGA	MNKEQTNIDTIIVDLIMDHFNVQTMEGLSPRLSDSDFDDICDMAESIFLKKVIIQEKPALA*
Ga0098060_10031995	F015796	N/A	MNKYQMKKYDDTKDRVLIREWFKLKGIVLEHGSKYGVDLEGKDYDIEISHLSFSNLWEQWKKENRFRIEIRKRNHYWDGIYNKSKTTHFVQLNKSGHELLVYPQDLIMEYSNNEVELDYLKHKGFNLKERTFMSIPFEVGKDKIKRYNI*
Ga0098060_10031996	F002249	AGGA	MSEYKSYPYTVPVNHKALQHTRIKELQVRMMRWVSWYKDEKVRDRTVDKDKWQHRFSFTLRCQKRAGKLSRDELKQLNYYWKIYNNYDH*
Ga0098060_10031998	F040345	N/A	MIKNSQHEDIITYILIGIGIGVGIGFVLKVFLDTYTLIESLPL*