Scaffold Ga0098060_1003013

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1003013
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6262
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (63.16%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006892	Metagenome	362	Y
F015659	Metagenome	253	Y
F016879	Metagenome	244	Y
F017045	Metagenome / Metatranscriptome	243	Y
F017558	Metagenome / Metatranscriptome	240	Y
F020445	Metagenome / Metatranscriptome	224	N
F035490	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100301311	F017558	AGG	MFFIIFKNKNNILTSYTNTIFSTEEEATDYAKRSLKRKDTWEVVRYDKENYDKYWYK*
Ga0098060_100301313	F035490	GAG	MNKIKLGTRTWVNAKGKKLKAFTFTYKDQGKKKVIQSPNKKWLEQEAERTLLRTGNINPKNIDLSISVNLEYVWDIYKKKCLARAYEPTTRFSKTTFKEYSEHYKHILKHCGNVDLTKIDATYIANFIDKLADQKHEYKTKIFHTFSRIYDTQVGHNKPFSSNIFKTGSFFDKEDKPQPKQHGKINFEEWNFDRIKTIISKIPSKPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEITNSVDFEKNLVPPKTKAGYRELEISVSLKDQLIDYINNLPKDQECLFLNARGKFYDLKNMITCLDKAVESLNLKLPVDRKTYFFRHWNVSYWCYQGKYTNPFDLATHMGDLDLKFINTNYIKKYATSKDSVKYSNHQTNNYNWS*
Ga0098060_10030132	F006892	GGAGG	MSDMGIIKPLRDRVRDLEVINEAHQKKNGQLRVEIQDKNKLIEELEEKINNPTKKMREQGEL*
Ga0098060_10030133	F015659	AGGAG	MIERSLKDAIQQFRKNIDDSDYANLGAKGKYLTVPYRIKFVRDYFGERMSIQTESTELANGSHKFKANIYIDDKLVSVGESKQMKNSDKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPQKKEVGLNAVIGVKDKKIEKKKSIKEIADEWISVMQNAAQNETSVGRFEKNLNPLRKEYLSELHQINSDLIQQQRVDQEEVSLHKQITNRKK*
Ga0098060_10030134	F020445	AGGA	MSDYDNTAALWKRQPRDTDVAGKKYPHYNGNITVGGKKMNLAAWLNTEKTKEGQPDISLKISEIVAKEEQPF*
Ga0098060_10030137	F016879	AGTAG	MNVIKESFFEASFKTIEEFDNAEVAAVSNVSDNAELKIMDIKLDKSLIKTNNKESNDGKEQQSIEKI*
Ga0098060_10030138	F017045	AGGA	MMARSNSLLRRYEKLQTLHSEIMRPAKNPGSRQCVHSAKAFKKYIKVYRQIVGVENEDAKFIYSQL*