Scaffold Ga0098060_1002387

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1002387
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7230
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006483	Metagenome / Metatranscriptome	372	Y
F043083	Metagenome	157	N
F060028	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_10023871	F006483	GGGGG	MARYIHSNCTYIQNHEEGTYTFTGPCRVTGKPYSVTILGCELWDLNQGALIQDALKTVSAEDREFVCSGTSPEGWEKLFS*
Ga0098060_10023874	F060028	GGA	MIKYAIQQEGEDKVAVAIIGDDMVEMTQHYWGFWNYGATSGSDLIWSNDVVKPYLGYFWTDKKRLKSSVELAAIYTIFNKHDNDLSIFKGKRGGVMPLAKKLAQDKMAEFKPMRFVRAIPSHYGFKKHSHSKSGLGIELNKEF*
Ga0098060_10023875	F043083	N/A	MADRETFENGKKNIKKYSVTLFDIKERDGYKSERIQIAWRPDWQTSHALLFENPNHINLIPQLLEEAGYAKQKTSVF*