Scaffold Ga0098060

Basic Information
Taxon OID	3300006921 Open in IMG/M
Scaffold ID	Ga0098060_1002143 Open in IMG/M
Source Dataset Name	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006921 Open in IMG/M

Scaffold ID

Ga0098060_1002143 Open in IMG/M

Source Dataset Name

Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7711
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7711

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	-16.21	Long. (^o)	-76.63	Alt. (m)	Depth (m)	30
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

-16.21

Long. (^o)

-76.63

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F019643	Metagenome / Metatranscriptome	228	Y
F053980	Metagenome	140	Y
F060890	Metagenome	132	Y
F065685	Metagenome / Metatranscriptome	127	Y
F076077	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100214310	F019643	AGGAG	MAKYYIKTGTLELIFSTEKEPYDACRRVIHEFNSNDELDEYMYCDERGYRDYTSADTTTFVIDTDQILRKEGYIK*
Ga0098060_100214311	F060890	AGGA	MIDSMKLTKHDYTVIADVLDAHYEEILGLQKNHYLDDDTDYFKQLEYLEELIDKVIYMVGVLSADE*
Ga0098060_100214312	F065685	AGGAGG	MKPVVGIGSNTKYGRVLKIQSNGVVVENSRGEKEMVSFRKIENQLKGSEK*
Ga0098060_10021433	F053980	GAGG	MNGYELLAQYEKQIKECFTVPNEWLPLDFQDQRTDCVSLADIERKCDQRDKCTLSNFEEESIERAKRVQIYRDQIQRGEEIEYLPIC*
Ga0098060_10021434	F076077	AGGAG	MFTEQEKLEITIDGLRSGDIFMSEDGIPVDECGDPIFEDDQ*
Ga0098060_10021439	F000325	AGGAG	MKTAKGNDKLGKENCIVVSRPVGDTCPPSCEFLGNGCYAEQLEKIYPGVRPAGMQNLITEKNKIRAMLINAEKKGNDLRWHERGDFFKNGSELDNEYVDNIIWACESILNEGGKLPKMWAYTHIYDTKLSMVLGKYITMYASIHNEDDWAVAKAAGFKLFAWCDSGENIAPKRPRSKKKADEWRSNLPKMRIIGQEKYITCPEIRRGRGVVTCTKTKNSVNCQLCVQGLANVLFPSH*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0098060_1002143

Overview

Ecosystem & Geography

Associated Families

Sequences