Scaffold Ga0098060_1000904

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1000904
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12573
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (88.10%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F014465	Metagenome	263	Y
F028360	Metagenome	192	Y
F040056	Metagenome / Metatranscriptome	162	Y
F062171	Metagenome	131	Y
F073529	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100090423	F005524	AGGA	MDIGDKVQHASTGSIGMVIDTTYELATPYQQQLCIQWEDEKAPHKDSWERRDTISIIPHEPYVYSFPD*
Ga0098060_100090425	F014465	AGGAG	MKLRGMTMIGALVRDCSKMMKIVTGYKCTNKGEYIQFAGDHETAWYPLDSFEILSTED*
Ga0098060_100090428	F073529	GGAGG	VKIGDLVILRTGRYNFSATEKAKWAWTDVLGVITDDRGFVDGTAEYRVLTTDGKHTWSHIEDLSIPEKP*
Ga0098060_100090431	F040056	AGGA	MQTQLDLRIGSLVRWNGDDTEGADIDELGIVIKMPEDSAYYYIAWNITNTVSHHSPDMVEESLYQRQMEIISHARD*
Ga0098060_100090437	F062171	GAGG	VKIGDLVSYGTMPHWKLEGCLGILVRKLQWNDSWIKGITWDGQPAWWIQYVGDETPTWNYEEELTLVTEGN*
Ga0098060_10009049	F028360	N/A	MLKVEVKDENDSVLTIDLSDDFVKWFKKEKNLKRWAPKQFQNWLIEVLQHTN*