Scaffold Ga0098060_1000247

Overview

Basic Information

• Taxon OID: 3300006921
• Scaffold ID: Ga0098060_1000247
• Source Dataset Name: Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26320
• Total Scaffold Genes: 60
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (95.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -16.21
  • Long. (^o): -76.63
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063086	Metagenome / Metatranscriptome	130	Y
F064107	Metagenome / Metatranscriptome	129	Y
F069452	Metagenome / Metatranscriptome	124	Y
F079210	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0098060_100024712	F064107	GGAG	MSKNQIKLTIDLSDDLLNTLLTVMAITSQQNALQGAMPMLMGAMGGQGKPTPPKGEEKPSMGFNMDKK*
Ga0098060_100024721	F079210	GGAGG	VIRKGDMVGFKMKGDYHLAIVIDDLGQGYPYGRYTGLLIGSDGDYIPLNETELTLLSTKKQVDGWVRQKNLQKLLDKKK*
Ga0098060_100024734	F063086	AGGAGG	MINLSVDTQSLTPSSKKDHLKIVFSEMTYLVESSFNVSVEEIYGEISFWTPTPDDEVEELELFGIIDIADETTIFEKIVHLTHEAGHVIYHMDELFREVEDTMFTESLAWYLGYHFMAEHGYYIDMSEYEKEISYALKLYRRRENDRDVE*
Ga0098060_100024756	F069452	GGA	LKWMMFNVGDIVRFKVKGIAKSRYNPNKKIGIVISVRRNVFMSYDGSKEDLVVVRWMPWDKEERMMEFYLEHLEG*