Scaffold Ga0070748_1324307

Overview

Basic Information

• Taxon OID: 3300006920
• Scaffold ID: Ga0070748_1324307
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 545
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_13243071	F105031	N/A	PMPDPSHRPYKPMTIIRPNTKPRLWWLFPWSYARTLHTAANALRALCDRQDKALEMQAHIIVDQSEEIANLRRRVEDLNEIIHGYRPGL*
Ga0070748_13243072	F000957	N/A	MSAFKHLDGMVALLSEIYEINERVMCGDLCSAKTAIASTKMKKLLNHYHEALHEDGASKVSLQAYIAAGGWVGITYSYEVDGFEVAGSQVPRR