Scaffold Ga0070748_1056366

Overview

Basic Information

• Taxon OID: 3300006920
• Scaffold ID: Ga0070748_1056366
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1551
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.12
  • Long. (^o): -75.25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002390	Metagenome	565	Y
F008400	Metagenome	334	Y
F048911	Metagenome	147	N
F072846	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070748_10563665	F002390	GAG	MKHAKQLFPIALQELLEIGEKARKQREDRELAKRGARPRETRACMHGACEEKQLKLQLQTRI*
Ga0070748_10563666	F048911	AGGA	MSKPAQNIDLWKQANSTLENIEEELREARFHNDTESIEYFLKEKRDTHALLTQLETKGETA*
Ga0070748_10563667	F072846	GGA	MRIAAHKQAPKLTSFEVFAYKQIKGQRACIKVLEVEARTAQDAGKTGQTFSKMMSYEYSHVKEVR*
Ga0070748_10563668	F008400	AGGAGG	MSKPDNNDLLPKLALGLSLFIAMKFVPKVLAWWTKKQGET*